Cytochrome P450 System

The cytochrome P450 system is the predominant part of phase I detoxification. When someone mentions phase I biotransformation/deotoxification, they are usually talking about the cytochrome P450 system, although phase I has additional activities going on, and they will be brought up.

Phase I Biotransformation (Detoxification) Explained

For preliminary information introducing you to what biotransformation/detoxification is all about, go to "Detox/Biotransformation, What Is It?" page that gives the basics.  If you want another more in depth slant on the subject there is a review of the entire system whittled down into a nutshell of data at the "Detox And Biotransformational System Overview".

The body has provided an enzymatic biotransformational/detoxification system to change lipid-soluble, or non-polar, non water soluble toxins into less active/less toxic water-soluble substances. Generally this is done via the enterplay of Phase I, and Phase II enzymatic systems and then assisted by Phase III transport systems. In this article, we will look at the Phase I enzymatic system.

In phase 1, enzymes act on a toxic or reactive compound to transform the compound into a form that is more water soluble, and can be excreted, or now has attachment sites that have been created, and these sites can be used as conjugation (attachment) sites by Phase II enzymes. These sites are created by either uncovering a reactive group, or adding a reactive group to the toxin. Generally, the idea is for phase I to make the substances less toxic, but sometimes the transformation makes them more toxic. This is called a bioactivation reaction. When this happens, if the new, more reactive substance is not immediately conjugated by Phase II, it can cause more damage than the original substance would have. This is an issue if Phase II is not working up to par for one of various reasons.

 

First Line Of Defense Against Toxins

Phase I enzymes are our first defense against toxins. Although they are in all cells of the body, they are in great number in the endoplasmic reticulum of the liver cells. You will here them called microsomal enzymes. Since most of what comes into the body via digestion goes through the liver first, this ensures the livers ability to detoxify any riff raff from the outer world. Usually, oxidation (oxidative reaction), reduction (reductive reaction) and/or hydrolysis (hydrolytic reaction) reactions are used to expose or add a functional group. Dehalogenation may also be used. Depending on the type of molecule being dealt with, this is usually either a hydroxyl , a carboxyl, or an amino group that is exposed/added. The structure of the molecule being biotransformed will determine which reaction of these groups are exposed or added. Usually, the compound will then be ready to undergo Phase II at this point. Sometimes, the new compound will be ready to eliminate immediately after Phase I.

Oxidation

Oxidation is the most common route of transformation of xenobiotics. In oxidation you add an oxygen and remove a hydrogen. This happens with oxidases, alchohol dehydrogenases, and cyp450 enzymes.

Reduction

In reduction you remove oxygen and add a hydrogen with the help of reductase enzymes.

Hydrolysis

In hydrolysis you add water with the help of esterases, phosphatases and others. Here are some slides if you are interested in learning more.

 

Main Enzymes Involved in the Oxidative Reactions

• Aldehyde oxidase (AO)
• Cytochrome P450s (P450s)
• Flavin-containing monooxygenases (FMOs)
• Monoamine oxidases (MAOs)
• Xantine oxidase (XO)

Main Enzymes Involved in the Hydrolytic Reactions

• Carboxylesterases
• Epoxide hydrolase
• Peptidase
• Others
  • Cholinestereases
  • Paraoxonases

Enzymes Involved in the Reductive Reactions

• Alcohol dehydrogenases
• Carbonyl reductases

 

CYP450 Enzymes

Phase I transformation of toxins involves a large group of isoenzymes. Although there are several types of phase I enzymes, the most common enzymes are collectively called the cytochrome P450 (CYP450) system. (The P stands for pigment and the 450nm is the wavelength of light absorption.) The CYP450 system is also known as the NADPH-CYP450 system because it uses oxygen and the co-factor NADPH. CYP contains an iron protoporphyrin prosthetic group (heme). CYP450 catalyzes primarily oxidation, reduction, and hydrolysis, reactions which generally expose a functional group (or adds a functional group). This is followed by the Phase II processes of methylation, glucuronidation, glutathione conjugation, amino acid conjugation, sulfation, or acetylation, which adds a compound to the functional group that was  exposed (or added) in Phase I. Ultimately the process is changing a lipophilic, or fat loving compound into a more polar or water loving compound, which is now in a form easier for the body to remove. The classic reaction is: NADPH + H + O2 +RH ----> NADP+ H2O +R-OH (RH is the toxin)

Among phase I enzymes, the CYP450 super family plays a key role in the metabolism of both endogenous, and exogenous molecules, such as steroids, fatty acids, carcinogens, toxins and 90% of drugs currently in use. It should also be mentioned that the CYP450 system is not just removing toxins, it is also producing some compounds such as cholesterol, steroids, fatty acids and vitamin D.

 

The Historical Development Of P450 Isoenzymes

In humans more than 50 enzymes make up the cytochrome P450 system. It is thought humans developed so many isoenzymes to keep up with the new alkaloids made by plants. The idea is that humans and other animals developed new isoenzymes to metabolize new plant alkaloids, the plants then developed new alkaloids and the animals respond again etc. It is known that the gene for CYP450 has existed for more then 3.5 billion years. Each enzyme works best in detoxifying certain types of chemicals, but with considerable overlap in activity among the enzymes, the system allows for some degree of back up assistance if an enzyme is not available. Each enzyme is encoded by separate genes. Most CYP450 genes are subject to genetic polymorphism which means we all have different abilities to transform toxins.

 

Categorization

The CYP450 enzymes are categorized into families and subfamilies. They are classified into different families according to the amino acid similarities of the encoding proteins. CYP450 genes in families 1–3 encode for 22 different isoforms, mainly involved in the metabolism of drugs and other xenobiotics, whereas families 4–51 are generally involved in the biosynthesis and metabolism of endogenous compounds.

Where You Find Them And What They Do

The CYP450 are heme based enzymes located in the smooth endoplasmic reticulum, largely concentrated in liver cells, and mucosal intestinal cells, but also found in a variety of other bodily systems to a lesser degree. The brain has additionally been identified as having a lot of P450 enzyme activity. The primary role for the P450 system seems to be one of metabolism, and detoxification of compounds after they have been consumed as part of food products. This accounts for the high concentrations of these enzymes located in the liver and small intestine. As much as 5% of liver proteins have been found to be CYP450 enzymes.

 

The Difference In A Slow And Fast CYP P450 System

CYP450 enzymes metabolize toxins slow compared to other enzymes. The slower speed, is made up for by devoting more space and increased production facilities for cyp450 enzymes. (However, slowness is probably a good feature since this enables, Phase II to keep up with Phase I's CYP450 enzymes.) Those people who have decreased CYP450 system activity will have slowed caffeine metabolism, and be more effected by caffeine, while those with an overactive system will be relatively unaffected by caffeine drinks. Caffeine is an example of a chemical directly neutralized by phase I. One way of objectively determining the activity of phase I is to measure how efficiently a person detoxifies caffeine. Using this test, a surprising fivefold difference in the detoxification rates of apparently healthy adults has been discovered.

 

The Process Of Biotransforming A Toxin

When cytochrome P450 metabolizes a toxin, it chemically transforms it to a less toxic, and excretable form, or converts it to an intermediate form that undergoes further biotransformation through Phase II. That intermediate form may be less toxic or it sometimes becomes a more chemically active (more toxic) form and this is called a bioactivation reaction. Making a toxin water-soluble allows its excretion by the kidneys. Transforming a toxin to a more chemically reactive form means it needs to be metabolized by the phase II enzymes, or it becomes more hazardous in the body than the original substance prior to Phase I biotransformation.

When the metabolites of Phase I are made in excess of what Phase II can conjugate, there is a back up of toxic metabolites and this can be a problem. Phase II must be competent, and able to handle Phase I metabolites to protect the body against diseases such as cancer.

 

Collateral Damage

A significant side-effect of phase I transformation (detoxification) is the production of free radicals. For each molecule of unwanted substance (toxin) metabolized by phase I, one molecule of free radical is generated. Without adequate free radical defenses, every time the liver neutralizes a toxin, it is damaged by the free radicals produced. This is where antioxidants come in.

 

AntioxidantsTo The Rescue

Antioxidants needed for protection from these free radicals that are produced. Many antioxidants can be involved in this process.  They include vitamin C (ascorbic acid), carotenes (vitamin A), tocopherols (vitamin E), copper, manganese, selenium, zinc, coenzyme q10, bioflavonoids, silymarin, thiols found in alliums such as garlic, and onions, as well as cruciferous vegetables such as brussell sprouts and cabbage. By far the most important antioxidant in phase I and phase II biotransformation is glutathione.

 

The Super Star Antioxidant, Glutathione

The most important antioxidant for neutralizing the free radicals produced in phase I is glutathione. In the process of neutralizing free radicals, however, the reduced form of glutathione (GSH), is oxidized to glutathione disulfide (GSSG). The reduced glutathione is required for one of the key phase II detoxification processes (glutathione conjugation) besides it's activity as an antioxidant. When high levels of toxin exposure produce so many free radicals from phase I detoxification that the glutathione is depleted, the phase II processes dependent upon glutathione stop. (Silybum marianum - Milk thistle can increase glutathione production by as much as 35%. ) Check out the article on glutathione for details on this and other methods to increase glutalthione production.

 

Pathological Detoxifiers

The toxins transformed into activated intermediates by phase I are substantially more reactive. Unless quickly removed from the body by phase II transformation (detoxification) mechanisms, they can cause widespread problems, such as induction of cancer. Therefore, the rate at which phase I produces activated intermediates must be balanced by the rate at which phase II finishes their processing. People with a very active phase I detoxification system coupled with slow, or inactive phase II enzymes are termed pathological detoxifiers. These people suffer unusually severe toxic reactions to environmental poisons.

An imbalance between phase I and phase II can also occur when a person is exposed to large amounts of toxins, or exposed to toxins for a long period of time. In these situations, the critical nutrients needed for phase II transformation (detoxification) are depleted, which allows the highly toxic activated intermediates to build up.

Nutrients Necessary For P450 To Function

As with all enzymes, the cytochrome CYP450 requires several nutrients to function, such as copper, magnesium, zinc and vitamin C. A considerable amount of research has found that various substances activate CYP450 enzymes while others inhibit it. Obviously, as long as Phase II is working, it is beneficial to improve phase I transformation in order to eliminate toxins as soon as possible. This is best accomplished by providing the needed nutrients and non-toxic stimulants while avoiding those substances that are toxic.

You now know that stimulation of phase I is contraindicated if the patient’s phase II systems are underactive. Additionally, you have to be aware that increasing, or decreasing Phase I will alter how many drugs are metabolized, and may cause trouble for people who are on medications.

 

Important CYP450 Enzymes

Several CYP450 enzymes have been identified as more important than others in oxidative metabolism. They are CYP3A4 (The most important, as most often used.), CYP2D6 (Another big player. Used about 1/2 as much as CYP3A4), CYP2C9, and CYP2C19. Other notable CYPs are CYP2E1, CYP2A6 and CYP1A2. Their job is to oxidize exogenous and endogenous chemicals to be able to excrete them from the body.

 

Inducers, inhibitors and Substrates

To better understand this system it helps to know a few important words. The substances that the biotransformation system works on are called substrates. The substances that increase any part of the biotransformational system are called inducers. The substances that decrease part of the biotransformational system are called inhibitors.

Substrate

A substrate is a material or substance that an enzyme acts upon. The substrate may be a toxin or hormone, or other exogenous, or endogenous substance that is acted upon and undergoes biotransformation. A substrate is not necessarily a toxin but often can be. A substrate can also be a necessary substance for bodily functions.

Inducer

Something that activates enzymes, makes the enzyme work better, allows the enzyme to work or otherwise stimulates the process of biotransformation. Substrates usually induce the creation of enzymes needed to break them down. For this reason substrates are often included in the list of inducers.

Inhibitor

Something that deactivates enzymes, decreases the enzyme from working well, or otherwise decreases biotransformation. Sometimes a substrate can cause competitive inhibition. In this case the substance is both a substrate and an inhibitor.

 

Unraveling How This Works

Keep in mind that our knowledge of this system is often from studies completed outside of the body (in vitro), or on constituents from food or herbs rather than the food, or herb itself. Neither of these scenarios are real life situations, and therefore the research may give us hints at reality, or completely miss the mark.

This is especially true when only a constituent of a food or herb is studied. We can't assume the whole food or whole herb will have the same effect, although they may. One food or herb can have both inducers and inhibitors in the item. Still it is good to know about this data. Some foods such as grapefruit have definitely been shown clinically to be inhibitors of CYP450.

A considerable amount of research has found various substances activate, or inhibit cytochrome P450 enzymes. This research has become very useful to practitioners.

Obviously, it is beneficial to improve phase I transformation in order to eliminate toxins as soon as possible. This is best accomplished by providing the needed nutrients that support and enhance the system, including non-toxic stimulants, while avoiding those substances that are inducers, but toxic.

Enzyme induction occurs for CYP450 with vitamins and minerals that are needed for the system to operate. The activity of CYP450 oxidases vary across the population due to polymorphism from one person to another. This is seen clinically in the different reactions people have to drugs, or especially when multiple drugs are co-administered. Most of the serious drug interactions are due to the interference of the metabolic clearance of one drug by another drug. One drug causes an increase, or decrease in the CYP450 enzyme activity. This then causes an increase, or decrease in how fast the body removes the other drug from the body. This can cause either an underdosage, or overdosage of a drug. In some cases this leads to serious clinical consequences, including death. It is not just drugs that effect the CYP450 clearance of other dugs. Foods, herbs, and supplements can effect the CYP450 enzymes, and can cause mild to significant changes in how the CYP enzymes are working.

Inducers Of Phase I Biotransformation

When there is a high load of toxins, the body can respond by increasing the necessary enzymes. A toxin that upregulates enzymes can selectively upregulate just one enzyme, or it may upregulate many enzymes.

There are toxins, foods, herbs, supplements known to be inducers, and substrates for specific CYP enzyme systems.

In general CYP450 enzyme nutrients include riboflavin, B6 (pyridoxine), B3 (Niacin), Folic acid, Vitamin b12, glutathione, branched-chain amino acids, phospholipids, flavonoids.

Deficiencies in vitamins A, B2 and B3, folate, C, E, iron, calcium, copper, zinc, magnesium, selenium have all been shown to decrease the activities of one or more phase I enzymes, or slow the transformation of specific drugs. So, it can be assumed that all of these nutrients are probably necessary for induction of Phase I.

 

Specific Substrates That Are Also Inducers of Phase I Transformation

Inducers are usually noticeable after a few days and act maximally after about 2 weeks Many drugs and environmental toxins activate P450 to detoxify the substance, and in so doing, not only use up compounds needed for this transformation (detoxification) system but contribute significantly to free radical formation and oxidative stress.

Food Examples

• High protein diets will induce CYP450
• Brassica family such as cabbage, broccoli, and brussels sprouts
• Charcoal-broiled meats
• Limonene in oranges and tangerines (but not in grapefruits)

Herb Examples

• Limonene in caraway and dill seeds
• St. John’s wort
• Herbs containing rosmarinic acid. (high amounts of rosmarininc acid in the mentha species)

Environmental Toxin Examples

• Carbon tetrachloride;
• Exhaust fumes
• Paint fumes
• Dioxin
• Pesticides

Drug Examples

• Alcohol
• Caffeine
• Nicotine in cigarettes
• Phenobarbital
• Sulfonamides
• Steroids.

Inducers of phase I Biotransformation That Also Induce Phase II Enzymes

The brassica family, i.e. cabbage, broccoli, and Brussels sprouts, contains chemical constituents that stimulate both phase I and phase II transformation enzymes. One such compound is indole-3-carbinol, which is also a powerful anti-cancer chemical. It is a very active stimulant of detoxifying enzymes in the gut as well as the liver. The net result is significant protection against several toxins, especially carcinogens. This helps to explain why consumption of cabbage family vegetables protects against cancer.

Oranges and tangerines (as well as the seeds of caraway and dill) contain limonene, a phytochemical that has been found to prevent, and treat cancer in animal models. Limonene’s protective effects are probably due to the fact that it is a strong inducer of both phase I and phase II detoxification enzymes that neutralize carcinogens.

 

Inhibitors of Phase I Biotransformation

It is known that certain drugs, toxins, foods and herbs can inhibit CYP450 enzymes. Science is still figuring out how, and which constituents are inhibitory. Please remember that it is usually constituents, and not whole herbs, or whole foods that are examined.

Inhibitors are usually fairly immediate and maximal around 24 hours. Many substances inhibit cytochrome P450. This situation can cause substantial health problems.

Food Examples

• Low protein diets inhibit CYP450
• Many flavonoids have been studied in vitro, and in animals that show an ability to lower CYP450, and to increase Phase II enzymes except for SULTs (enzymes used in sulfation) which they inhibit. Naringin has been extensively studied and its reactions are well documented in humans.
• Naringenin is high in grapefruit juice, and less so in oranges and tomato skin.
• Other flavonoids that have demonstrated mild inhibition of multiple CYPs in animal models include genistein, diadzein, and equol from soy, and theaflavins from black tea.
• Additonal inhibitors
  • Curcumin from Turmeric
  • Capsaicin form Chili pepper
  • Eugenol from Clove oil
  • Quercetin from onions
  • Goldenseal

Quercetin derivaties isoquercetin and rutin are shown to increase CYP450, and phase II GST and UGT. So there is some discrepancy on quercetin.

Drug Examples

• Benzodiazepines
• Antihistamines
• Cimetidine and other stomach-acid secretion blocking drugs
• Ketoconazole
• Sulfaphenazole

 

Other Examples

• Decreased in infants and in elders
• Inhibited by toxins from inappropriate bacteria in the intestines (endotoxins)

 

Research On Herbal Constituents

You can not assume a constituent and a whole food/herb will have the same actions. Certainly the information gleaned on constituents can make us more cautious, and more aware. For example, Milk thistle has been studied in relation to its effect on CYP450 system. If you look through the research you will find conflicting studies. In vitro studies would make it appear that constituents in milk thistle would inhibit CYP3A, while clinical studies are conflicted and look more like the ingested amount does not effect the person in a real life situation.

If you look at most of the data (largely in vitro) available it would look at first glance that Milk thistle inhibits a variety of CYP450 enzymes. Here is an overview: Milk thistle components have been shown to inhibit a variety of cytochrome P450 (CYP) isozymes, including CYP3A4, CYP2D6 and CYP2C9; UDP glucuronosyltransferases (UGT), including UGT isoform 1A1 (UGT1A1); and several efflux transporters, including ATP-binding cassette (ABC) transporter B1 (ABCB1, P-glycoprotein.

However, clinical studies look like not enough of the key constituents are ingested to do this. The fact is that they are just looking at constituents also. Not the whole plant. Here are a few synopsis of these studies.

1. Collectively, this study indicates that milk thistle poses little risk of interfering with the pharmacokinetic profile of chemotherapeutic agents that are substrates for CYP3A4 and UGT1A1. (Nielka P.H. van Erp, 2016)
2. So far, the clinical research that I have read which uses standard doses of various Silybum products on the market which are usually standardized to silymarin, shows that the products do not reach a threshold strength that would end up causing an inhibitor action in relation to the drugs tested. (Petra Jan?ová,, 2007), (Zuber R, 2002), (van Erp NP, 2005) One clinical study I find did find an issue with it. I include some specifics as follows: There is significant difference in absorption of domperidone on pretreatment with silymarin, which is due to inhibition of P-glycoprotein (Phase III transporter) and CYP3A. Silymarin, which inhibits CYP3A4, should be contraindicated for domperidone.(Yamsani sk, 2014)

Currently, the research is inconclusive about if, and how various constituents from milk thistle are acting in my humble opinion. The moral of this study is to be very cautious about all research until the results show extremely obvious cause and effects. Additionally, pay attention to whether whole herb, a constituent of the herb, or group of constituents are being studied. Also note if it is clinical research or in a petri dish.

 

Competitive Inhibition

When there is more than one compound that is transformed by a single enzyme, there is what is called competitive inhibition. In this case one compound is unable to be transformed due to the competition of the other compound.

Increased Toxic Load Causing Inhibition

An increase in toxins can also lead to what is called inhibition due to increased toxic load. I personally would not call this inhibition, but it does decrease enzymes available and researchers call it inhibition. It is simply a case of using up available enzymes faster than they can be made.

Inhibition Due To Depletion Of Necessary Cofactors

Any depletion of co-factors necessary for the CYP450 system to function will stop it in it's tracks or at least decrease it's ability to detox properly. Those nutrients used as co-factors were listed above.

 

More on Inducers and inhibitors in relation to drugs.

If a medication is taken with an agent that inhibits its metabolism, then the drug level can rise and possibly result in a harmful or adverse effect. If the medication is taken with an agent that increases its metabolism the drug level can fall, and also possibly result in a harmful, or adverse effect.

Information regarding a drug's CYP450 metabolism and its potential for inhibition, or induction can be found on the drug label, and accessed through the U.S. Food and Drug Administration (FDA), or manufacturer's websites. There are universities with websites that have lists of inducers and inhibitors of CYP450 in relation to drugs, food and herbs also.

At times, these CYP450 inducers and inhibitors are commonly ingested items such as grapefruit juice and tobacco. In the case of grapefruit juice, there are numerous medications known to interact with grapefruit juice including statins, antiarrhythmic agents, immunosuppressive agents, and calcium channel blockers. Furthermore, the inhibition of the enzyme system seems to be dose dependent; thus, the more a patient drinks, the more the inhibition that occurs. Additionally, the effects can last for several days if grapefruit juice is consumed on a regular basis. This effect of this is not seen with other citrus juices.

 

Grapefruit Juice As An Inhibitor Of Phase I Transformation

Grapefruit juice decreases cytochrome P450 activity, and therefore the rate of elimination of some drugs from the blood. This has been found to substantially alter their clinical activity and toxicity. Eight ounces of grapefruit juice contains enough of the flavonoid naringenin to decrease cytochrome P450 activity by 30%.

Grapefruit juice contains furanocoumarins with the ability to inhibit the metabolism of a variety of drugs. It inhibits CYP3A4. It is thought that CYP3A4 metabolizes about 50% of all drugs. CYP3A4 is located in the epithelial cells of the small intestines and colon and in the parenchymal cells of the liver. So, many drugs are metabolized twice by CYP3A4 before reaching the circulation. In a 2013 research article it was found that more than 85 medications are effected by grapefruit juice. The study mentioned that the interaction with 43 of them can cause serious effects such as nephrotoxicity, gastrointestinal bleeding, depression and other less than fun conditions.

200–250 mL juice or a whole grapefruit has sufficient potency to cause a significant pharmacokinetic interaction. Frequent use over a period of time will increase the action even more. Additionally, there is a greater reaction seen in those older than 70 years.(David G. Bailey, 2013)

I have worked with people who have used grapefruit juice to inhibit CYP3A4 on a daily basis so that they could take less of an expensive drug and still get the desired results.

Curcumin, the compound that gives Turmeric its yellow color, is interesting because it inhibits phase I while stimulating phase II. This effect can be very useful in preventing certain types of cancer. Curcumin has been found to inhibit carcinogens, such as benzopyrene (found in charcoal-broiled meat), from inducing cancer in several animal models. It appears that the curcumin exerts its anti-carcinogenic activity by lowering the activation of carcinogens while increasing the transformation of those that are activated. Curcumin has also been shown to directly inhibit the growth of cancer cells. As most of the cancer-inducing chemicals in cigarette smoke are only carcinogenic during the period between activation by phase I, and final detoxification by phase II, curcumin in the Turmeric can help prevent the cancer-causing effects of tobacco. Those exposed to smoke, aromatic hydrocarbons, and other environmental carcinogens will probably benefit from the frequent use of curry or turmeric.

Gender and Age Relationship

Progesterone Relationship

The CYP3A family of enzymes is sensitive to hormones. It appears to be regulated partly by progesterone, or the ratio of progesterone to estrogen. In premenopausal women, they have 30%-40% more CYP3A4 than men or postmenopausal women. Pregnant women also appear to have higher levels.

Aging

The activity of phase I transformation enzymes decreases in old age. Aging also decreases blood flow through the liver, further aggravating the problem. Lack of the physical activity necessary for good circulation, combined with the poor nutrition commonly seen in the elderly, add up to a significant impairment of transformation capacity, which is typically found in aging individuals. This helps to explain why toxic reactions to drugs are seen so commonly in the elderly.

 

Relationship of CYP enzymes to Disease and Health

Impaired Liver Function

It is known that impaired liver function can cause lower transformation/detoxification in general. Since the enzymes of Phase I and Phase II are located in different parts of the cell, different liver diseases may effect the activities of enzymes more or less than others. Additionally, the liver makes bile that is used to remove toxins out of the body via the route of the gastrointestinal tract. The Gall bladder is also important in that it stores and concentrates bile.

Intestinal Disease

I would also think that any disease in the intestines, especially the small intestines where there is inflammation, or damage to the epithelial cells will also effect the intestinal biotransformation/detoxification enzymes. The microbiome can affect both the health of the gut wall, as well as nutrients available, so I would think the gut microbiome can easily effect the bodies transformation/detoxification enzymes.

Cell Membrane Integrity

Lack of cell membrane integrity from poor quality of dietary lipids, or lack of dietary lipids, or oxidation of membrane lipids may also be a factor.

High Inducibility Phenotype for CYP1A1

People with a high inducibility phenotype for CYP1A1 have a higher risk for cancer, no matter what their exposure to known carcinogens.

Relationship Of PancreatitisAnd CYP450

Idiopathic pancreatitis has been associated with upregulation of CYP450 enzymes in many patients. Xenobiotic exposure seems to also increase the susceptibility to alcohol-related pancreatitis.

Genetic Differences

A specific gene encodes each CYP450 enzyme. Every person inherits one genetic allele from each parent. Alleles are referred to as “wild type” or “variant,” with wild type occurring most commonly in the general population. An “extensive” (i.e., normal) metabolizer has received two copies of wild-type alleles. Polymorphism occurs when a variant allele replaces one, or both wild-type alleles. Variant alleles usually encode a CYP450 enzyme that has reduced, or no activity. Persons with two copies of variant alleles are “poor” metabolizers, whereas those with one wild-type, and one variant allele have reduced enzyme activity. Finally, some persons inherit multiple copies of wild-type alleles, which results in excess enzyme activity. This phenotype is termed an “ultrarapid” metabolizer.

Studies have currently identified the occurrence of defective alleles as having four key phenotypes (poor, intermediate, extensive and ultra rapid metabolizers) that could be used to distinguish the diversity in the human CYP450 system.

CYP450 enzyme polymorphism are responsible for observed variations in drug response among patients of differing ethnic origins. It is known that 7 percent of white persons and 2 to 7 percent of black persons are poor metabolizers of drugs dependent on CYP2D6, which metabolizes many beta blockers, antidepressants, and opioids. These people are known as poor metabolizers of not just drugs but other xenobiotics to different degrees.The people with the worse metabolization have two genes encoding for the lower CYP2D6 activity.

There are also people who are called extensive metabolizers who have greater CYP2D6 activity. These folks are really good at metaoblizing the drugs and xenobiotics that the CYP2D6 enzymes work on. This is not as common as the poor metabolizers. CYP2D6 is primarily influenced by genetics so determination of slow, or fast metabolism of CYP2D6 is possible with gene analysis.

20% of Asian people are poor metabolizers of drugs dependent on CYP2C19, which metabolizes phenytoin (Dilantin), phenobarbital, omeprazole (Prilosec), and other drugs. Variables in drug response among persons of different ethnic origins also can be caused by genetic variations in other drug-metabolizing enzymes, drug transporters, and drug receptors.

For the chemistry geeks I have included this

CYP enzymes have a unique ability to activate molecular oxygen to suandbsequently insert a single oxygen atom stereo-specifically into inert chemical bonds. CYP enzymes catalyses the insertion of oxygen into activated carbon - hydrogen bonds to yield alcohol (e.g. RH + O2 + 2H+ + 2e– → ROH + H2O). However, they can also carry out plethora of other reactions including epoxidation, dealkylation and heteroatom oxidation (Saxena, Parijat, Sudeep, Feroz, 2008)

 

Other Phase I Enzymatic Systems

Flavin-containing monooxygenases

Flavin-containing monooxygenase, (FMO) oxygenates drugs, and xenobiotics containing a “soft-nucleophile”, usually nitrogen or sulfur. FMO is a flavoprotein containing a single FAD. FMO, like cytochrome P450, is a monooxygenase, utilizing the reducing equivalents of NADPH to reduce 1 atom of molecular oxygen to water, while the other atom is used to oxidize the substrate. FMO and CYP450 also exhibit similar tissue and cellular location, molecular weight, substrate specificity, and exist as multiple enzymes under developmental control. The human FMO functional gene family is much smaller (5 families each with a single member) than CYP450. FMO does not require a reductase to transfer electrons from NADPH and the catalytic cycle of the 2 monooxygenases is strikingly different. Another distinction is the lack of induction of FMOs by xenobiotics.

As with the CYP monooxygenase system, over the course of evolutionary plant–animal warfare, FMO developed broad substrate specificity at the expense of turnover. Both monooxygenases are capable of oxidizing thousands of plant alkaloids, and other natural products as well as the thousands of synthetic therapeutic drugs. This is an excerpt from this research review which can be found here.

Alcohol,  Aldehyde Dehydrogenases And Monoamine Oxidases

Other enzyme systems are the alcohol and aldehyde dehydrogenases (metabolize alcohol), and monoamine oxidases (metabolize serotonin, dopamine and epinephrine).

 

Mycotoxins and the Phase I enzymes that are induced by Aflatoxin

Expression of the CYP1A2 gene is induced by some polycyclic aromatic hydrocarbons (PAHs), some of which are found in cigarette smoke. The enzyme's endogenous substrate is unknown; however, it is able to metabolize some PAHs to carcinogenic intermediates. Other xenobiotic substrates for this enzyme include caffeine, aflatoxin B1, and acetaminophen.

Aflatoxin biotransformation

Cytochrome P450 enzymes convert aflatoxins to the reactive 8,9-epoxide form (also referred to as aflatoxin-2,3 epoxide in the older literature), which is capable of binding to both DNA and proteins. Mechanistically, it is known that the reactive aflatoxin epoxide binds to the N7 position of guanines. Moreover, aflatoxin B1-DNA adducts can result in GC to TA transversions. A reactive glutathione S-transferase system found in the cytosol and microsomes catalyzes the conjugation of activated aflatoxins with reduced glutathione, leading to the excretion of aflatoxin. Variation in the level of the glutathione transferase system as well as variations in the cytochrome P450 system are thought to contribute to the differences observed in interspecies aflatoxin susceptibility.

 

Tidbit of Fun Information

CYP2E1 catalyzes oxidation of ethyl alcohol to acetaldehyde, detoxifies many small carbon-chain molecules such as ketone bodies from gluconeogenesis and the break down of fatty acids. CYP2E1 is increased in insulin dependent diabetes, in morbidly obese people and in starvation.

 

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